not Photoshop cause i never used it idk how Photoshop works lol
That happens when you leave offshore too quickly. A packet that arrived from server containing the location of puppet in offshore, arrived too late. You already changed the scene, but the game doesn't know that, so it just puts it on those coordinates. There's no background check wether the object belongs to the scene.
Check out various tools for VCO at The Pirate's Cove: